Search results for "Single-molecule experiments"

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Protein Conformational Landscapes and Catalysis. Influence of Active Site Conformations in the Reaction Catalyzed by L-Lactate Dehydrogenase

2015

In the past decade, L-Lactate Dehydrogenase (LDH) has become an extremely useful marker in both clinical diagnosis and in monitoring the course of many human diseases. It has been assumed since the 1980s that the full catalytic process of LDH starts with the binding of the cofactor and the substrate followed by the enclosure of the active site by a mobile loop of the protein before the reaction takes place. In this paper, we show that the chemical step of the LDH-catalyzed reaction can proceed within the open loop conformation, and the different reactivity of the different protein conformations would be in agreement with the broad range of rate constants measured in single-molecule spectrom…

KIEsReaction mechanismFree energy surfacesbiologyLDHChemistryStereochemistryActive siteSubstrate (chemistry)Single-molecule experimentsGeneral ChemistryQM/MMArticleCatalysisCatalysisQM/MMReaction rate constantTetramerbiology.proteinReactivity (chemistry)Reaction mechanism
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